
PaintTool SAI is a popular lightweight painting software that uses layers to separate different elements of an image. While working with layers in PaintTool SAI, users may encounter issues such as layers disappearing when attempting to move them or flip the canvas. This can be due to various reasons, including the program's settings, file types, or unintentional clicks. To address these issues, users can try unchecking the Pick & Move Layer option, ensuring the use of compatible file formats, and being cautious when clicking on different options. Additionally, it is important to save work in multiple file formats to preserve layers and prevent data loss.
| Characteristics | Values |
|---|---|
| Reason for disappearing layers | Pick & Move Layer enabled |
| Solution | Uncheck Pick & Move Layer |
| Other possible reasons | Flipping the canvas, resizing, saving as the wrong file type |
| File types that keep layers | .SAI, .PSD |
| File types that collapse the image | .PNG, .GIF, .JPG |
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What You'll Learn

Ensure 'Pick & Move Layer' is unchecked
If you're experiencing issues with layers disappearing in Paint Tool SAI, there are several potential causes and solutions to consider. One common issue is related to the "Pick & Move Layer" setting. This setting allows you to move whatever you mouse over with pixel-precise control. However, if you have a transparent background layer, it will default to the first layer when you don't click on a pixel. To resolve this issue, simply uncheck the "Pick & Move Layer" option in your move tools. This will allow you to move layers without unexpected behaviour.
Another potential cause of disappearing layers is related to the file type you are using. Certain file types, such as .PNG, .GIF, and .JPG, do not support layers and will collapse the image into a single layer. To preserve your layers, it is recommended to save your files in .SAI or .PSD format. By saving two versions of your file, one in a layer-compatible format and another in a web-compatible format, you can ensure that your layers remain intact while also having a version suitable for uploading to the web.
Additionally, it's important to be cautious when using the "Layers" tab in Paint Tool SAI. In some cases, simply clicking on the "Layers" tab or attempting to flip the canvas can result in the deletion of layers. This can be frustrating, especially after investing significant time and effort into your artwork. To mitigate this issue, consider using keyboard shortcuts or alternative methods for flipping the canvas, and always remember to save your progress frequently to avoid losing your work.
Furthermore, it's worth noting that Paint Tool SAI provides various layer options and effects to enhance your workflow. You can access the Layer Panel, typically located on the left side of the screen, to manage your layers. Here, you can create new layers, adjust opacity settings, apply textures and effects, and organise your layers into folders for better management. Utilising these features effectively can help you make the most of layers in Paint Tool SAI and avoid unexpected issues.
Lastly, if you encounter issues with disappearing layers, it's recommended to seek assistance from the Paint Tool SAI community. Online forums and communities, such as Reddit and DeviantArt, can provide valuable insights and troubleshooting advice. Many users share their experiences and offer solutions to common problems encountered while using Paint Tool SAI. By engaging with these communities, you can often find answers to your questions and learn more about utilising layers effectively in Paint Tool SAI.
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Use the 'Show Navigator' to locate layers
If you are facing issues with locating and moving layers in PaintTool SAI, you can try the following:
By default, you can find the layers in PaintTool SAI on the left side of the screen, right beside the tools panel. You can change the position of your Layer Panels by clicking on Window > Show Navigator and selecting Layer Panels on Right Side. Alternatively, you can use the function that toggles placement rightside/leftside for the navigator and layer panels. This is a matter of personal preference.
To create a new layer, you can use one of the two following icons in the Layer Panel:
- Normal layer: This is the basic layer that is most commonly used, and it allows you to draw with any of the tools presented.
- Linework layer: Within this layer, you will get a different set of tools. Instead of being able to draw freely, you will have specific tools with which you can draw straight lines and curves.
Another way to add a layer is to click on Layer in the top menu and select the type of layer you wish to create. You can also use the "Pick & Move Layer" option in your move tools, which allows you to move whatever you mouse over. However, if your background layer is transparent, it will default to the first layer when you don't click on a pixel. If this is causing issues, you can simply uncheck the "Pick & Move Layer" option.
To make locating layers easier, you should always name your layers. When you create a new layer, it's automatically titled Layer1, Layer2, Layer3, and so on (up to 256 layers max). To change the name of a specific layer, simply locate and double-click on the name, make your changes, and click OK. If you have too many layers, you can also create folders, which work just like folders on your PC.
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Name your layers for easy access
When working on a big project in PaintTool SAI, you will likely have a lot of layers, and it can be easy to get lost while searching for a specific layer. To make your life easier, you should always name your layers for easy access.
By default, you can find the layers in PaintTool SAI on the left side of the screen, right beside the tools panel. When you create a new layer, it's automatically titled Layer1, Layer2, Layer3, and so on (up to 256 layers max). To change the name of a specific layer, simply locate and double-click on the name, edit it, and click OK.
In the cases where you have too many layers, giving them all names might not be sufficient. Instead, you should consider creating folders. These layer folders work the same way as the folders on your PC. You can also use the New Layer Set feature, which acts like a group of layers, allowing you to organise your layers and prevent getting lost in the layers.
Additionally, if you want to move a layer, ensure that you uncheck the "Pick & Move Layer" option in your move tools. This option allows you to move whatever you mouse over, but it will default to the first layer if you don't click on a pixel.
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Use the eye icon to toggle layer visibility
Layers in PaintTool SAI can help you achieve your artistic vision faster, and they make your work easier. They are like sheets of glass placed on top of each other to make a picture. You can find the layers in PaintTool SAI on the left side of the screen, right beside the tools panel. You can change the position of your Layer Panels by clicking on Window > Show Navigator and Layer Panels on Right Side.
To create a new layer, you can use one of the two following icons in the Layer Panel: Normal layer and Linework layer. A normal layer is the basic layer that is most commonly used, and it allows you to draw with any of the tools presented. A Linework layer, on the other hand, will give you a different set of tools. Instead of being able to draw freely, you will have specific tools with which you can draw. This layer is most commonly used for creating perfectly straight lines and curves.
Beside each layer in the panel, there will be an eye icon that you can click on to toggle hide/show. This allows you to see the results without any elements of a specific layer getting in the way. You can also change the opacity settings for each layer separately. Just like Photoshop, PaintTool SAI allows you to choose different opacity settings for each layer separately. You can find the opacity settings right above the Layer Panel.
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Save your work in the correct file format
When working with layers in PaintTool SAI, it's important to save your work in the correct file format to preserve your progress and ensure compatibility with other software. Here are some detailed instructions and tips for saving your work in PaintTool SAI:
Understanding the File Formats:
PaintTool SAI's native file format is .sai, which supports multiple independent editing layers. This format is specifically designed for the software and preserves all the layer information. If you need to edit your work in Adobe Photoshop, you can export your files to .psd format, which is compatible with Photoshop's layer-based editing.
Choosing the Right Image Format:
When saving your artwork, you can choose between various image formats, including +.png and +.jpg. The choice depends on your specific needs:
- .PNG: This format is generally recommended for digital art as it preserves the exact pixel-perfect representation of your artwork. It offers better quality than JPG, especially if you require a transparent background.
- .JPG: This format is "lossy," meaning it saves an approximation of the image rather than the exact pixel data. It's useful when file size is a concern, as it compresses images into smaller files with minimal quality loss. However, the compression can cause artefacts or distortions, especially on low-quality settings.
Saving Layers as Separate Files:
If you want to save each layer as a separate image file, you can do so by exporting them as .png or .jpg files. This allows you to open each layer in your preferred animation software and create animations by copying each frame onto an alpha layer.
Organizing and Naming Layers:
To stay organized, especially when working with many layers, remember to name your layers appropriately. You can also create layer folders, similar to PC folders, to keep related layers together. This makes it easier to locate and manage specific layers within your project.
By following these guidelines, you can effectively save and manage your work in PaintTool SAI, ensuring compatibility and preserving the quality of your artwork.
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Frequently asked questions
If you accidentally deleted a layer, try using the "'Undo' function (Ctrl + Z). If this doesn't work, it may be because you saved your work in the wrong file type. Only certain file types can support layers, such as .SAI and .PSD. File types such as .PNG, .GIF, and .JPG will collapse the image and not preserve the layers.
To prevent accidentally hiding a layer, always name your layers. You can do this by locating and double-clicking on the name, changing it, and clicking OK. You can also take advantage of creating folders to organize your layers.
In your move tools, you may have "Pick & Move Layer" enabled. This function allows you to move whatever you mouse over, but it will default to the first layer when you don't click on a pixel. To fix this, simply uncheck the "Pick & Move Layer" option.
Flipping the canvas may cause layers to disappear if you make the width very narrow. To fix this, grab the other tab and move it to the other side, then finish moving the first tab to fit inside the canvas space and click OK.











































